NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENCT_F37DT1O01EQBDJ

Scaffold FACENCT_F37DT1O01EQBDJ


Overview

Basic Information
Taxon OID2035918005 Open in IMG/M
Scaffold IDFACENCT_F37DT1O01EQBDJ Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameNevada Desert Research Center
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042710Metagenome157N

Sequences

Protein IDFamilyRBSSequence
FACENCTE_1404680F042710N/ANAWSEIIMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEVLLEVHGEAKPAKPQFVPKPN
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