Scaffold Coalbed1143_GAIGPUK01E11D2

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Coalbed1143_GAIGPUK01E11D2

Scaffold Coalbed1143_GAIGPUK01E11D2

Overview

Basic Information
Taxon OID	2038011002 Open in IMG/M
Scaffold ID	Coalbed1143_GAIGPUK01E11D2 Open in IMG/M
Source Dataset Name	Coalbed microbial communities from New Mexico, USA - 343
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Virginia Polytechnic Institute and State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	514
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Source Dataset Sampling Location
Location Name	New Mexico
Coordinates	Lat. (^o)	36.728056	Long. (^o)	-108.220833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029741	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Coalbed5_14070740	F029741	GGAG	MPVLAYLGVVGFVLVALLFVADATLERNSPVIVTSDRIGLPEKWHSDTIQTLTTELAHAPDMTSPAVLAAQPKAEPKVLETIEPLARAARAEAPPERNRVTPPMDYRQNRVVDRFSIGGL

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