Scaffold ACOD_GAKN62C01CCDXA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACOD_GAKN62C01CCDXA

Scaffold ACOD_GAKN62C01CCDXA

Overview

Basic Information
Taxon OID	2040502000 Open in IMG/M
Scaffold ID	ACOD_GAKN62C01CCDXA Open in IMG/M
Source Dataset Name	Fungus garden microbial communities from Atta colombica in Panama - dump bottom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences, DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	536
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Source Dataset Sampling Location
Location Name	Gamboa, Panama
Coordinates	Lat. (^o)	9.1167	Long. (^o)	-79.7	Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039517	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
ACODB_1054060	F039517	GGAGG	MTTQLRLFSTTGSENISKLEKEVNDWLTAKGDSIQPVNSQTATCAVGKDGEQKESQAVIIALWYLDPPRPGIKS

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