NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold FACENC_GAMC6GA01BU1SJ

Scaffold FACENC_GAMC6GA01BU1SJ


Overview

Basic Information
Taxon OID2040502001 Open in IMG/M
Scaffold IDFACENC_GAMC6GA01BU1SJ Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 2 North Carolina CO2+
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameOrange County, North Carolina
CoordinatesLat. (o)36.0Long. (o)-80.934Alt. (m)Depth (m).1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021280Metagenome / Metatranscriptome219Y
F053954Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
FACENCE_4031050F021280GGAGMKVSPSLTPGDQLPVLLERIERREKSARTRAVLFSLLPVTLTVLLISYAASSVRNAQKEVDALKTEASTYTTQIDTLKKNADTYKNQSQSLQGDTANYKNQVTELQAQLADTQKALSEA
FACENCE_4031060F053954N/ARRRLRLHSDFFSRRDRIVALRSLLNSYQHQQVGGLSPDAKLDQYFDQYLAHLGE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.