NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FACENC_GAMC6GA01CEEWP

Scaffold FACENC_GAMC6GA01CEEWP


Overview

Basic Information
Taxon OID2040502001 Open in IMG/M
Scaffold IDFACENC_GAMC6GA01CEEWP Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site 2 North Carolina CO2+
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameOrange County, North Carolina
CoordinatesLat. (o)36.0Long. (o)-80.934Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014560Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
FACENCE_2914660F014560N/AAEIRPQTDQPTVAQVSYINEKELQVRSTRGSLAITVDGETQIVPEAMAYRVILDPESYYAAENAQGPRGVGTRQGGPPLKAGKSHFLLIAIIVTGIATGVALYEALQSPDAPR
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Institute for Fundamental Biomedical Research
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