Scaffold mc15a_MC15A_contig15655

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold mc15a_MC15A_contig15655

Scaffold mc15a_MC15A_contig15655

Overview

Basic Information
Taxon OID	2051223000 Open in IMG/M
Scaffold ID	mc15a_MC15A_contig15655 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10368
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1678
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp.	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Sampling Location
Location Name	Orebro University Hospital, Sweden
Coordinates	Lat. (^o)	59.274717	Long. (^o)	15.230656	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099269	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
MC15A_contig15655_metagene_gene_3	F099269	GGAGG	VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGS

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