NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold mhc6b_MHC6B_contig31135

Scaffold mhc6b_MHC6B_contig31135


Overview

Basic Information
Taxon OID2051223007 Open in IMG/M
Scaffold IDmhc6b_MHC6B_contig31135 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Orebro University Hospital, Sweden, Of Individuals With Crohns Disease

Source Dataset Sampling Location
Location NameOrebro University Hospital, Sweden
CoordinatesLat. (o)59.274717Long. (o)15.230656Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050793Metagenome145N

Sequences

Protein IDFamilyRBSSequence
MHC6B_contig31135_metagene_gene_2F050793GGAGGMRKQVLVPENVEMADIHAIPKRASKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDSLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGQMTDEEFQQFLDAHRI
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