NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPWRP_F5MPXY302G1QLV

Scaffold GPWRP_F5MPXY302G1QLV


Overview

Basic Information
Taxon OID2067725000 Open in IMG/M
Scaffold IDGPWRP_F5MPXY302G1QLV Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.303611Long. (o)-89.332778Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075259Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
GPWRP_01482360F075259N/APLRAAALLSRLIVSAMVGSHISRAVFQSIEADVEADGLPVPFRQFTFFFAATVDRIALGFRPTYMGTRKQGYMHVLGGPIPATRLIRRALRVYRGFPTYEPLLFDNLARTLSVRFFRPQHYMLDGDILPPADRLDVDVACRVTLIRA
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