Scaffold GPKNP_GG3DY5402IEB5T

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GPKNP_GG3DY5402IEB5T

Scaffold GPKNP_GG3DY5402IEB5T

Overview

Basic Information
Taxon OID	2070309009 Open in IMG/M
Scaffold ID	GPKNP_GG3DY5402IEB5T Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Kansas, USA
Coordinates	Lat. (^o)	39.214012	Long. (^o)	-96.585283	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006903	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
GPKNP_10588290	F006903	N/A	TAMEAWYAHSLGKPVVAYTGGSPIHPWSAYVPVATAADLEDAIATLLGRLGR

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