Scaffold OSPC_contig04178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OSPC_contig04178

Scaffold OSPC_contig04178

Overview

Basic Information
Taxon OID	2077657024 Open in IMG/M
Scaffold ID	OSPC_contig04178 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	645
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	One Hundred Springs Plain, Yellowstone National Park
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.711389	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076264	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
OSPC_00624770	F076264	GAG	MSAISSAIQSMVNGLQSLFVALIDVFSNAVNAIGNTLASLANPIGYLIGVLAVFGSLISIIYYVFRGKGGVGGLVSGIRSVFTSFF

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