Scaffold FNTS_GKKEVUV02JTLBL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FNTS_GKKEVUV02JTLBL

Scaffold FNTS_GKKEVUV02JTLBL

Overview

Basic Information
Taxon OID	2081372006 Open in IMG/M
Scaffold ID	FNTS_GKKEVUV02JTLBL Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site NTS_071 Nevada Test Site
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	532
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Nevada Test Site
Coordinates	Lat. (^o)	36.766667	Long. (^o)	-115.95	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019791	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
FNTS_04988160	F019791	AGGAGG	MYWYNPATRTSERVAAPANDEQAVSMLAGHPDSARFVSEYAELRRSGAPIERALVLVGHEERLREHEHAPVRLAWRDRPARPRPTALAYELLLAARLREQGE

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