NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ADL24m1u_contig04187

Scaffold ADL24m1u_contig04187


Overview

Basic Information
Taxon OID2084038011 Open in IMG/M
Scaffold IDADL24m1u_contig04187 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 24m 0.1um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y
F068284Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
ADL24m1u_00279840F027372N/AMIEVIASSTEALYDDYADLKLQTSSGYATYGLAGIVVNDCVAVICGNCATDEELADNDDGSIFANSEWDYPAPACEDCQKPLNVNLIVHKSYDPELHFRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEDYEIPTDSAKYVNDIAPQLQQLAGHAPYDTTPTDIGYEIHKEDVLPAFREAYHTEAVNLTTTNW
ADL24m1u_00279850F068284N/ARDYAPTDMFESDEHYEIPTDSAQYANNIAPQLRQLAGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEAYHTEAVKREI
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