NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ADL5mRS1u_GM034OG02HFQHG

Scaffold ADL5mRS1u_GM034OG02HFQHG


Overview

Basic Information
Taxon OID2084038019 Open in IMG/M
Scaffold IDADL5mRS1u_GM034OG02HFQHG Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 5mRS 0.1um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002325Metagenome571Y

Sequences

Protein IDFamilyRBSSequence
ADL5mRS1u_00082540F002325N/AGRPAIAFDGDGDGLEGTGLSVTQPNTTYLVFEHQGSFDGGRVLSGVSERQLVGWAPSDGKNWSTYAGDKLVGSPDKNIQLMTAVFDGGNSIIREDGVETVVGDAGMDDLGGLSVGYDSFDGDFYADAYVSEIVVVNSGSVDSRFENHLLEKWGDNSAIPDSEDFEH

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