Scaffold P1_DRAFT_NODE_234288_len_2621_cov_14_490652

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P1_DRAFT_NODE_234288_len_2621_cov_14_490652

Scaffold P1_DRAFT_NODE_234288_len_2621_cov_14_490652

Overview

Basic Information
Taxon OID	2088090004 Open in IMG/M
Scaffold ID	P1_DRAFT_NODE_234288_len_2621_cov_14_490652 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2671
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008224	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
P1_DRAFT_00537260	F008224	N/A	CPKVGQRRLGGFDSVGIAVDPEQPATRNDSLQDQAGVARLPDRAVDRDCARSGLKQLYYL

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