NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LWSO2_GGBSFTI02HFISN

Scaffold LWSO2_GGBSFTI02HFISN


Overview

Basic Information
Taxon OID2088090006 Open in IMG/M
Scaffold IDLWSO2_GGBSFTI02HFISN Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location NameLake Washington, Seattle
CoordinatesLat. (o)47.052Long. (o)-122.267889Alt. (m)Depth (m)62
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029740Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
LWSO2_06354640F029740N/AVPVFGAVTPDRSNAAYAAIRGDGRLFELPVFNPGIHYGSVYLAYARQSPRERPQGYSTTATRASELLSRRLRGLSCGHGSLPPGLGVRFVAVHRGLYRQSGWFAP
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