Scaffold LWSO2_GGWJX9X02IYJRW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LWSO2_GGWJX9X02IYJRW

Scaffold LWSO2_GGWJX9X02IYJRW

Overview

Basic Information
Taxon OID	2088090006 Open in IMG/M
Scaffold ID	LWSO2_GGWJX9X02IYJRW Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle
Coordinates	Lat. (^o)	47.052	Long. (^o)	-122.267889	Alt. (m)		Depth (m)	62
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004137	Metagenome / Metatranscriptome	451	Y

Sequences

Protein ID	Family	RBS	Sequence
LWSO2_08422030	F004137	GGGGG	MDLNLIVLGLVGWALVLLVVLVLMRMTGDQDRAARHQEKLLDPLSDVTITQFGNS

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