Scaffold P3_DRAFT_NODE_366965_len_5301_cov_15_729862

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P3_DRAFT_NODE_366965_len_5301_cov_15_729862

Scaffold P3_DRAFT_NODE_366965_len_5301_cov_15_729862

Overview

Basic Information
Taxon OID	2088090008 Open in IMG/M
Scaffold ID	P3_DRAFT_NODE_366965_len_5301_cov_15_729862 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5351
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017119	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
P3_DRAFT_00424470	F017119	AGGAG	MITDQASANQSKPGSGQEPTNVERRTLIGAGLAALLTAACSSPTANGAQRLSSSGLVTAGERDEGTDEGRSVPNDPFILLLKGVYQPVPERSGQHNFGLTTVDLGDGSYSKTRIYPIFGIRGSTHQDKSIGTFYVSPGKGLCAYDLPGGAIAMRFGKGNFPVVVPDGMGGQYLEGWLPVTILEATGIYQAFAGGHNHMVDKLHQLVAGAPFAGFPSSGYDELCFCMIFQHSDPSFL

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