NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LWAnN_GIDYKCY01DHBAA

Scaffold LWAnN_GIDYKCY01DHBAA


Overview

Basic Information
Taxon OID2088090009 Open in IMG/M
Scaffold IDLWAnN_GIDYKCY01DHBAA Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location NameLake Washington, Seattle, Washington, USA
CoordinatesLat. (o)47.07Long. (o)-122.27889Alt. (m)Depth (m)62
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091358Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
LWAnN_00227920F091358N/AYEILKSEASALASEVEDITYSWSTNATDNYGLLGDILGADEYYELTNIDSYVIPNEPASYDPAITNATLTHERKRREEEWDLIRTAWYIRKGFLRGIVDNLRDALDEQYYAQLKNRLTAYRNVTPFQILDHLNDRWCPLDVKAKKALKDAYYTKWDGDEHLTAFGKRLDDDQRALVRSD
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