NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16503524

Scaffold GPIPI_16503524


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16503524 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1483
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037956Metagenome / Metatranscriptome167Y
F043036Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_01018770F043036GGAGVSWLSLTKATTILDHDVQRARESLGRAISKAWIVVAGRSPAPAIDTNVPLRVQVTPSPGWRLVGRDWLEHPVLHWETSEIECLCTPWMSPRTSQPAPSSQSRAKIEIWREDIGRLWGGPESSEDEVPPYESGSSG
GPIPI_01018790F037956GGAGGMGSLDTPPSWSDPGVLASIEQAFDATWPVIRAHESGANKARMAELSMALSHKLVELVAQGVTDPQELRRLALEAFPAYSG
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