NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16606723

Scaffold GPIPI_16606723


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16606723 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2465
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008528Metagenome / Metatranscriptome332Y
F039362Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_02475180F008528AGGTGGVNRTSIVLVASFVVASVFARPAVAPEVTFLSPCECQGFHGKNRWIAKTDLTPVPSDKSAIQPVTPSQIYAWEGLGPNVDLAGYTEARMPSEQKWYALSGLVVDAKVEADGDIHIALTDAAGNNVGTVSAEVPVGPKWCEIRQAVFGWTTQKFPFGVKTAHTLKIREPHVITVTGKAFYDIGHAPADHSNRRRTPKDYAVWEIHPVMKMEVIQ
GPIPI_02475190F039362GGAMDSTPKSLKAALEAIRDMASNALDQINQSQEKRSMQWVCKECRYVKRFTKSVLLETAGRCPRCKSTAFNPILETAGYASSPKEG
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