NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16828337

Scaffold GPIPI_16828337


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16828337 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)60958
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (66.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000442Metagenome / Metatranscriptome1132Y
F070501Metagenome123Y
F075263Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00106170F070501AGGAGGMSTNQSKEVSLDPALVPLLCATLLYTVSWIMGCSSPATTAGKSSAARTESREQLRLASDDASDKLAPPMSGRKLTIEKMAQRAATSLQFSNEEYGVAFDAPKGYLLKEGELSQMDRGLGYLGPVPMHFATQGGVRLATVEPPTGVRLGTNFVNEFFTMSALYDSTAESCSALDIAPEFRGAPVTRTVDAIVFRGTEESAVASMHQYTGIYLHGFANETCYEIGYGVATVGDGPARNLKHVDPQKLVSRLEKILDTVRIAPPNFERFTATD
GPIPI_00106460F000442GGAGGMLFATVSRGKNRGARLLPHRFKDERYHVQLGKQGPYIPLADSRDIPRYLANGYSLQMSGVQSVTPSLIRPESIRGWEGNAWP
GPIPI_00106570F075263GGAGVSGTFFIVAVVFALILAALLLWTFGAAHHKRRRSAGLAVLDSAPQHLCNMGPIRRSQDPADLRYAADRGGRDLAKRLGRERRKVALLYLNSLRQDFEQLLRIARVVALLSPEISSSNEYERLRLSVLFRLRFQMVKLRFLFGDAAMPQLTSLGKMVTSLAIRMETAMETLGERAALAANLALQSE
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