NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17011697

Scaffold GPIPI_17011697


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17011697 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2278
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047138Metagenome / Metatranscriptome150Y
F061364Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00733400F047138GAGMRSTRILLIVGLLASSAALAQSHVRLSYEFAVPRGETKDYIDRFSSRGAHLDASFELSYAFHLELSAGLNSFNAVKQGVLTTTDGQDVSGKQFRYLNVIPVMGGFAFHVPLRHGGRVWAGVNGGAAYFERVIDVGLNEYTLSDWQWGVQPHVGIAFGCGKGGTALFFDARWNYFWERHGLPVQQYFSFGVGLLFGGAPAKHK
GPIPI_00733420F061364GGAGMVQRGAVDAWLVLAVAALAAALLWWRSRVDDARRDDAWDALARDFMLGFDAGSRSIRGKYRLLRLDITARRTLLGLGPWRTRIDAQYEGVVPERLALGITGAGALRAAARSPEALTLWLDAERRRALLPPLLQGGVRVSGHTATLETPGLLTDPEALRTSLARLAELAKLLSLR
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