NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17020521

Scaffold GPIPI_17020521


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17020521 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4147
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072616Metagenome121N

Sequences

Protein IDFamilyRBSSequence
GPIPI_01870610F072616AGGTGGMKFPPVPIAGAGCSSVSGLLLLVISLFALLLWQEPLVAQGAVSPGDIVETNINYQPVTGEVLRSYGNLADLNLGQNNVGRYLEVQYMKVVQKAGTGGTSKFHPGDTVQRSNGSIVITGRIMKTNGSYCEVDSSGSGFTGWSKCAELRMVSKAPESHLTGAAAGSTAVLALASGFPEEAGKPNPVGNHGFYLLKDPVDTALTKGGFRPPAGLSPVHGMHLVCTKQTPDCQKAVAAIILDSATAVKSGPEGKAVFPAVLPGVYYVFGMGQHQGKPLLWNVRVQIETGDNSVTLDDRNASALESPR
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