Scaffold GPIPI_17183848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GPIPI_17183848

Scaffold GPIPI_17183848

Overview

Basic Information
Taxon OID	2088090014 Open in IMG/M
Scaffold ID	GPIPI_17183848 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3821
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016337	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_02148650	F016337	N/A	VTEKMQNVIASVLGFLISFSSGPQQEQPRDLKGGGHLLGESAEHFFSEGAVGQLLRACKAGDWKAVKQLAKVVNPASKPDAKDLCAKAALVKQQATSGERQEYSGGDHQTMRTDTFTLDGGFLVKIIMVFDTSTMDVEGYHPKYFGELFAGLREAYGEPSKNYTEPVLDAYGVKYDARRAEWMGKQDVITIIEQPGRNGRTEIVVETLAERSRATKAPKTENPLQQQPSHSFHEKAG

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