NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17206184

Scaffold GPIPI_17206184


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17206184 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016071Metagenome / Metatranscriptome250Y
F020204Metagenome / Metatranscriptome225N
F066540Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00408540F020204N/ASKSWLMRQSGVPQPTTDPNVPLRIRVMPSPGWRLXXXXXXXXXXXHWEESQIECSGKPWAPSTQNLSSTANTKIRAKIEVWEEDIFRLWGRTGESSSINPLADRGTHVD
GPIPI_00408560F066540N/AMLDGAERRHHLARSWRVPDDLHVEVEGGEVMVSLPGTTYAVTYYKPANSRQLHGKHFPEEVDRRSPISQAAFVGKAWKLANDKARELRWIG
GPIPI_00408590F016071AGGGGGMPHKIERKIAFGPSALNDLAQAFDTAWLELHAWGIEANTDVQIQWIKTKLAQRIMEYAAEGERDVAHLKEFGLQGLPHVCAHRIGLPRRPS
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