NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17409824

Scaffold GPIPI_17409824


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17409824 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3712
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018796Metagenome / Metatranscriptome233Y
F046663Metagenome151Y
F054221Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_03251980F018796GGAGMKGLVSIFALTLALAFTVPAFAGPTETKEQCQKDGGDWDAKTKHCSGKY
GPIPI_03252000F046663AGGMEELDLNQPAIVFWMHHPGEITRYERLQDAVHSVMVTPSAKMFCIAWITTRDRHIDMEEIRQIERHSILSRYLG
GPIPI_03252010F054221N/AMVGLTTSSIAALFFKSGSPSEALFSKSGSPSEMAQGEVRCEGAGAVVINIDGADYAVNGMASRRYPPIQRVWNSASHPESDIDRIIVRGLTLCDWGSKSHSTLHASAMN
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