NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICI_8695306

Scaffold GPICI_8695306


Overview

Basic Information
Taxon OID2088090015 Open in IMG/M
Scaffold IDGPICI_8695306 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4117
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004158Metagenome / Metatranscriptome450Y
F043654Metagenome156N

Sequences

Protein IDFamilyRBSSequence
GPICI_02408650F004158N/AELPAARATVEQSKAAAVTAQTELDNHEQWLGRHQELYARAVKGCERRLRRQAFIGACKQAAWLPIQLLATASTGLFNAAIAYPRRRWLRAKLKDRIQELDDPSELKFAQQLQDRIQAMDRRGLR
GPICI_02408660F043654AGGTGGMGGEAHLPEKPGEDFVSEAEKPDSSPSSEAVSARAVYDDIVLRIKNFQAALDPDEKMVLSVRGVSTDAVGVRGATIWFQGRNNQGCAVVIAQHYTQVTVVMTAERLYRGEAPTEIGFVTE
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