NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICI_8994581

Scaffold GPICI_8994581


Overview

Basic Information
Taxon OID2088090015 Open in IMG/M
Scaffold IDGPICI_8994581 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8637
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028324Metagenome192Y
F030070Metagenome186Y
F077463Metagenome117N

Sequences

Protein IDFamilyRBSSequence
GPICI_00125280F028324GGAGMTHSNLSVEVQGTHILVVLRGTCFRAKYRKQEAPWLATDELGPDDPEAPMTLSEFRNLAWTAANETARQLGWIKSYDELHKAAKRAAG
GPICI_00125290F030070AGGAGGMLRLYAAERALQSKLIYRGYDLEVRRARSGWQVGVYPRTADLPILSRCEIFAPDPDEAVVIAKGRVDRANS
GPICI_00125310F077463GAGVTGLLAICAALLGFCVALMWFYLPASTTTTNGSNVTKYQTETEAALSGLEEQQALTNSKLDAIRDELRALNQKAAGAASVTPPSQATPPEAAGAPRAGGTLSR
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