NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICI_9042384

Scaffold GPICI_9042384


Overview

Basic Information
Taxon OID2088090015 Open in IMG/M
Scaffold IDGPICI_9042384 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2641
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008442Metagenome / Metatranscriptome333Y
F061022Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
GPICI_00670570F008442AGCAGMSDAAVKRCGLGALIMASYQIGPDRQEAISLAIKAMRPLHGTATLMHVNDSRGHAAVLALFDDVIAAG
GPICI_00670600F061022GGAGGMACGPKEYRAHAESCLWRARIVRNPILAEEFEKLAQSWLRLAKAAERGGLVVQPQPKKRDEFRA

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