NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BSEYNP_contig04671__length_1414___numreads_17

Scaffold BSEYNP_contig04671__length_1414___numreads_17


Overview

Basic Information
Taxon OID2100351008 Open in IMG/M
Scaffold IDBSEYNP_contig04671__length_1414___numreads_17 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.708917Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027904Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
BSEYNP_00920150F027904GGAGGVEQKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNATVFAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYALAAVSSAASSANVFAKCYFTKGTGSPA
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