Scaffold BSDYNP_contig02985__length_2112___numreads_33

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BSDYNP_contig02985__length_2112___numreads_33

Scaffold BSDYNP_contig02985__length_2112___numreads_33

Overview

Basic Information
Taxon OID	2119805007 Open in IMG/M
Scaffold ID	BSDYNP_contig02985__length_2112___numreads_33 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2112
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N

Sequences

Protein ID	Family	RBS	Sequence
BSDYNP_01267620	F006070	AGG	MTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANADLNVQVIANENAKNYAYGNLLDGLNYFTEESYPDFNVGSAVAVPAGSLSAPSVQAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF

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