NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FNTS007_GKN1E7E01ES1C2

Scaffold FNTS007_GKN1E7E01ES1C2


Overview

Basic Information
Taxon OID2119805009 Open in IMG/M
Scaffold IDFNTS007_GKN1E7E01ES1C2 Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site NTS_007 Nevada Test Site
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameNevada Test Site FACE
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018165Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
FNTS007_09240760F018165AGGAGMRDDQTVAEMANEVLLRQAKARADRNGEPIEAAMKTVVGTEAGKQLRELRDGPHGDEGVEEWQVGIAQERAQERAEALGGRLEEEIPEHPT
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Institute for Fundamental Biomedical Research
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