Scaffold FWIROz_GJ87FRN02F6MM8

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FWIROz_GJ87FRN02F6MM8

Scaffold FWIROz_GJ87FRN02F6MM8

Overview

Basic Information
Taxon OID	2124908006 Open in IMG/M
Scaffold ID	FWIROz_GJ87FRN02F6MM8 Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Wisconsin Rhinelander (WIR)
Coordinates	Lat. (^o)	45.68	Long. (^o)	-89.63	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038888	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
FWIROz_05911500	F038888	GGA	VTRLAAVVLLAAVLVAGCGAAKQPQADPGVFATKVVDLIVHNKYSAAWADLHPVDQQVAPSTEYVGCENRNPVIAVPRTVKVLGVKDEPIGIGDGTFVDSKAVAVRLGFSGNFKVTHTVHVVADHGKWT

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