NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FWIRElOz_GKZ9IRQ02JUA10

Scaffold FWIRElOz_GKZ9IRQ02JUA10


Overview

Basic Information
Taxon OID2124908007 Open in IMG/M
Scaffold IDFWIRElOz_GKZ9IRQ02JUA10 Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site Metagenome WIR_ElevOz2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameWisconsin Rhinelander (WIR)
CoordinatesLat. (o)45.68Long. (o)-89.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005461Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
FWIRElOz_03741570F005461GGAVGDIRASDKIPGARVVARRRPEPESSGGRPREWLARADGAVQEARTEGSDLVLFGEPVPYHPGRAERRSGVPTEVITTDRVPNACTCSWAYAHGKLTLKHYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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