Scaffold kg300_3280912

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold kg300_3280912

Scaffold kg300_3280912

Overview

Basic Information
Taxon OID	2124908010 Open in IMG/M
Scaffold ID	kg300_3280912 Open in IMG/M
Source Dataset Name	Keratinized_gingiva_contig300
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Los Alamos National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1912
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Keratinized Gingiva → Keratinized Gingiva Microbial Communities From Saint Louis, Missouri, Usa

Source Dataset Sampling Location
Location Name	St. Louis, MO
Coordinates	Lat. (^o)	38.646	Long. (^o)	-90.224	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
kg300_00737670	F018385	N/A	LRGLHPWSLTDTSGTETTMAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN

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