Scaffold A2_v1_NODE_31095_len_739_cov_5_491204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold A2_v1_NODE_31095_len_739_cov_5_491204

Scaffold A2_v1_NODE_31095_len_739_cov_5_491204

Overview

Basic Information
Taxon OID	2124908029 Open in IMG/M
Scaffold ID	A2_v1_NODE_31095_len_739_cov_5_491204 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	789
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039248	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
A2_v1_00076040	F039248	N/A	GLLTRPALGADEGSSAPLPFACEVRYHFREQVRNAKPGEKRVSAPSDEREALPVSHATASDGSAARLVEGRVAHLPYRFLIKIGRSGESQVETLEVNVLDAAGKSLPGFPQTMPNPLVKTGETSRKEFEIPVDATLKKKIEKTLLAQDQFLTHVDLIVGADDDFLSAEFPK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.