Scaffold B3_all_c_ConsensusfromContig161131

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B3_all_c_ConsensusfromContig161131

Scaffold B3_all_c_ConsensusfromContig161131

Overview

Basic Information
Taxon OID	2124908038 Open in IMG/M
Scaffold ID	B3_all_c_ConsensusfromContig161131 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1699
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016758	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
B3_all_c_00136160	F016758	AGGAG	MNVKGIIYLTGKTAIIGVFGEEPWNSFIAKLAAKDKFFSNIIMSVTPVPLDKFILFLDELVKEFFNNDMMQYVTFGKVAAQYALSPEGLYKSYLLTKDTKKFVESVLPKFWSTYFDEGLVTTKFENNVAHLKITGLQFKHLYFEYLIMGYFQKALKIFGKKTVAKRIRSLSLGNDDIYFQFKIKDS

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