Scaffold B3_v_NODE_60639_len_2655_cov_6_670056

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B3_v_NODE_60639_len_2655_cov_6_670056

Scaffold B3_v_NODE_60639_len_2655_cov_6_670056

Overview

Basic Information
Taxon OID	2124908039 Open in IMG/M
Scaffold ID	B3_v_NODE_60639_len_2655_cov_6_670056 Open in IMG/M
Source Dataset Name	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2705
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010859	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
B3_v_00230990	F010859	GAGG	MSVGGRGRVRELVLRRAALVAGVLVLFALLFLVSGHWVLGIIVGVAAAAAVWVFLLARTV

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