Scaffold B4_c_ConsensusfromContig145002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B4_c_ConsensusfromContig145002

Scaffold B4_c_ConsensusfromContig145002

Overview

Basic Information
Taxon OID	2124908040 Open in IMG/M
Scaffold ID	B4_c_ConsensusfromContig145002 Open in IMG/M
Source Dataset Name	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010111	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
B4_c_05432610	F010111	AGGAGG	MDFINNNGEKIGSLTTAXSNDKTXTINRXNDVTTVSVRDRNTGKSTTETFFGDSPFGK

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