Scaffold A2_c1_ConsensusfromContig22514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold A2_c1_ConsensusfromContig22514

Scaffold A2_c1_ConsensusfromContig22514

Overview

Basic Information
Taxon OID	2124908043 Open in IMG/M
Scaffold ID	A2_c1_ConsensusfromContig22514 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5027
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005040	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
A2_c1_00613680	F005040	GGAG	MAVKVAVKSDSRYLQERSGAFRQIENLSITASTPAYPAVLHRTRRTMILADDHTHAVIALDKEMLVSRNDDMAVVLIAYAEPTEATWKALEQHMASERVTAEAAREAKGKALLERKKKAADIQ

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