NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig03379

Scaffold contig03379


Overview

Basic Information
Taxon OID2140918001 Open in IMG/M
Scaffold IDcontig03379 Open in IMG/M
Source Dataset NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1241
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameOne Hundred Springs Plain, Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.711389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F077499Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
OSPD_00360490F056742N/AMFVVEVEKVYGVKIESCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAIMRGRPNLYACIKCNSVLTAEESIVHTLQHMKQLGYNPLAYNENI
OSPD_00360500F077499N/AIFVFPYESLKAVGYPKITNSEIIYILTITIPIGGHPDAGSPMDEKMRFLSTYMPLEFQKLQYMKAIDRALDILKYSLYSREDNVLFEIANKINGIYDVKELTNKVKDVECTKDLKQVDVTLTEAKRYIYPDLSLSKYASAQAKQLNMRKYEYYARVFQCYINQDKDLDMLTLFRVSNTVYNYIRLNNLSNLVKKIQFKNDRIAQLMEKIKQRVKITLEAMSDRRPVEPDVNVLNSITIRIKEIDLG
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