NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold ConsensusfromContig200486

Scaffold ConsensusfromContig200486


Overview

Basic Information
Taxon OID2140918008 Open in IMG/M
Scaffold IDConsensusfromContig200486 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008517Metagenome / Metatranscriptome332Y
F010656Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Bog_all_C_02991250F008517AGGAVSKAVIIGWIIELAGMALWLYGYFATGNPSLIDWHAYTPWWIADYLPNIESEIGMALVFAGMVPIYWPPRR
Bog_all_C_02991260F010656AGGAGGMEILINFFALRPTFTFVGLKIVWYIYLFNTFVQTYIAVAGISRILAQRGISWEVWLPNSAPLILGLVAQLALVRLLLEVAAIIISTSHTSKR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.