NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ConsensusfromContig255364

Scaffold ConsensusfromContig255364


Overview

Basic Information
Taxon OID2140918008 Open in IMG/M
Scaffold IDConsensusfromContig255364 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007788Metagenome / Metatranscriptome345Y
F102128Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Bog_all_C_02056010F007788N/AQIVVVRRGGDHGCLITILLLIVAWPLAIVYWILRLMAWVVGVMVDWLTLGPERRRRR
Bog_all_C_02056020F102128AGGAGMTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAV

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