NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold NODE_689544_length_1029_cov_5.487852

Scaffold NODE_689544_length_1029_cov_5.487852


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_689544_length_1029_cov_5.487852 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006520Metagenome / Metatranscriptome371Y
F032014Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_01274130F032014GGAMKQDIKDISEKELTKLHSEYQAGLGRPVPAVVHRQDRRIPGCVSVEDSAAWKSR
Iowa-Corn-GraphCirc_01274140F006520N/ALIVVVGEAAVIAIGLTLDRIYPLASSPVSLSLFFAVLAFGWPLAVRSTEPKHAKSVKLAS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.