NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_187222_length_855_cov_7.460819

Scaffold NODE_187222_length_855_cov_7.460819


Overview

Basic Information
Taxon OID2140918024 Open in IMG/M
Scaffold IDNODE_187222_length_855_cov_7.460819 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014685Metagenome / Metatranscriptome261Y
F063211Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
B_all_v_02616220F014685GGAGMANLNIEVPDHVVRSLEGIAAAQRKSIQQLALERLSSLVEVVPKARAGSPTAVLRAMQEPPHPSSADVDELDAAMLVGRLPIR
B_all_v_02616240F063211AGGAGMRNNVFSGVAAFCPRGACRSLASFLLAFSAMAFLFTGTISVAQDSKTPAVLPAPSS

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