NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_279766_length_1966_cov_9.726348

Scaffold NODE_279766_length_1966_cov_9.726348


Overview

Basic Information
Taxon OID2140918024 Open in IMG/M
Scaffold IDNODE_279766_length_1966_cov_9.726348 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2016
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
B_all_v_01181580F002889GAGGMNRNARIFCFLVLTLAALVGCSSKPSAQDSKKAETAPDKIQGKAQVLTESGGASDSALNAGGPSVYLWVGARRYRLFLRTATEIVHGDQYVAEGVYAQKAIDEIGDPDQGKNGYPLQTSCERVVTTAWRGLPFDAINSQAAVLRAIVKRYPARAVFLVAQIRPVTATESGAASAEPKKDAAAEEKNIKEVSVAADKQKALLMEGSPVQTAPLWEPEGGTVSCKVVIDPEGKISDLESTTQLCESVTWSQFRYQPPVQGGHPVKVKTEVEVRFEARK

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