NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_102798_length_1091_cov_6.799267

Scaffold NODE_102798_length_1091_cov_6.799267


Overview

Basic Information
Taxon OID2140918025 Open in IMG/M
Scaffold IDNODE_102798_length_1091_cov_6.799267 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
b3_nosca_v_02270700F002889GAGGMNRNAYIFGFLVLTLAGLVGCSSAPPAKDSTKAGTALDKIQGKSQIVQTETTQIDSALNAGGPSVYIWEGARRYRLFFKTAVEVAPGKEYIVEGVNAQRVIDEIGDPDQGKNGYPLPESCDRVVKTAWSGLAFDVSDGQATVLRNRVKRYPARPVFLVNRITPVPEGGAASADAKKAAEEKDIPEVTVAADKQRALLIDGPAVLPAPLWQPAGGTVRCKVYIDKEGKISELGTGEQLCEAVPWSQYRYQPPVQGGHPVTVSTVVEVRFEPRK

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