NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GQKUMWE01EY7I0

Scaffold GQKUMWE01EY7I0


Overview

Basic Information
Taxon OID2140918027 Open in IMG/M
Scaffold IDGQKUMWE01EY7I0 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → unclassified Haloferacalesvirus → Halovirus HSTV-2(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007954Metagenome342Y

Sequences

Protein IDFamilyRBSSequence
ADL36m2_00284920F007954N/AMSNQIVVGEIAQFVNKAATFGARSGVTVAVEFDDGKVMTQTWAEVEAVEAVEATSEPSEPTPETIRDAWAEIAADEWQKFQSAAAEFGVHNMTRTAMVDTLADMGVMPGDDLSDDTHEQTVFNG
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