NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold STU__NODE_7248_len_6009_cov_27_141787

Scaffold STU__NODE_7248_len_6009_cov_27_141787


Overview

Basic Information
Taxon OID2149837021 Open in IMG/M
Scaffold IDSTU__NODE_7248_len_6009_cov_27_141787 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from the University of Arizona (HMP) - UAf1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChinese National Human Genome Center, Beijing
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6067
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location NameArizona, USA
CoordinatesLat. (o)32.23Long. (o)-110.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039147Metagenome164N

Sequences

Protein IDFamilyRBSSequence
STU_0915.00001090F039147AGGAMRARRLLILLMMLLLLPQAQAERLTLYTRPNNVDEATPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQQSCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
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