NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwBSRL2_contig_10187043

Scaffold SwBSRL2_contig_10187043


Overview

Basic Information
Taxon OID2162886013 Open in IMG/M
Scaffold IDSwBSRL2_contig_10187043 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2570
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030494Metagenome185Y
F035366Metagenome172Y
F060113Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
SwBSRL2_0504.00008120F035366AGGAMTIANKNDANKEAVLAALALVRQALENSPETAEVARALDQCARLELAIRQFHAEGIRFAAFTLLRMVLSHGTGFTEPVQLATRALKEALEVAGFPH
SwBSRL2_0504.00008130F030494N/AMDRHLPASLGGPAVPRRSASTVRRHDMVGTPLFWLTIAITICAVVPVVFFRAARPWIGSAILLMWTGFFTANAIRSRRTHSVISAPVYFLAAILLAATASGFVEVQIWMVWLIGAGIIAANLSERVIGKYL
SwBSRL2_0504.00008140F060113AGGMIWFFERPGERLQCEIRQAASGQGYELVWTSSDGRVHVELANDASELMRRRRALEQWLKLDGWVRPDRTTPTRPPRHLRTRKTDKRLH
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